RGT - Regulatory Genomics Toolbox
RGT is an open source Python 3.6+ library for analysis of regulatory genomics. It is programmed in an oriented object fashion and its core classes provide functionality for handling regulatory genomics data.
The toolbox is made of a core library and several tools:
HINT: ATAC-seq/DNase-seq footprinting method
Motif Analysis: TBFS match and enrichment
THOR: ChIP-Seq differential peak caller
TDF: DNA/RNA triplex domain finder
RGT-Viz: Visualization tool